CliMA Publications

Submitted/in press

  • Wang, Y., Frankenberg, C., 2022: Technical note: Common ambiguities in plant hydraulics. Biogeosciences, in review.

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  • Wang, Y., Braghiere, R. K., Longo, M., Norton, A. J., Köhler, P., Doughty, R., Yin, Y., Bloom, A. A., Frankenberg, C, 2022: Modeling global carbon and water fluxes and hyperspectral canopy radiative transfer simultaneously using a next generation land surface model-CliMA Land. Journal of Advances in Modeling Earth Systems, in review.

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  • Wang, Y., Köhler P., Braghiere, R. K., Longo, M., Doughty, R., Bloom, A., Frankenberg, C, 2022: GriddingMachine: A database and software for earth system modeling at global and regional scales. Scientific Data, accepted.

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  • Gallet, B., Miquel, B., Hadjerci, G., Burns, K., Flierl, G., Ferrari, R., 2022: Transport and emergent stratification in the equilibrated Eady model: the vortex gas scaling regime. Journal of Fluid Mechanics, submitted.

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  • Huang, D. Z., Huang J., Reich, S., Stuart, A. M., 2022: Efficient Derivative-free Bayesian Inference for Large-Scale Inverse Problems. Inverse Problems, submitted.

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  • de Hoop, M.V., Kovachki, N.B., Nelsen, N.H., Stuart, A.M., 2021: Convergence Rates for Learning Linear Operators from Noisy Data. arXiv e-print arXiv:2108.12515, in review.

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  • de Hoop, M. V., Huang, D. Z., Qian, E., Stuart, A. M., 2022: The Cost-Accuracy Trade-Off In Operator Learning With Neural Networks, arXiv e-prints arXiv:2203.13181, submitted.

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  • Huang, D.Z., Schneider, T., Stuart, A.M., 2022: Iterated Kalman Methodology For Inverse Problems, Journal of Computational Physics, in press.

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  • Lopez-Gomez, I., Christopoulos, C., Langeland Ervik, H. L., Dunbar, O. R. A., Cohen, Y., Schneider T., 2022: Training physics-based machine-learning parameterizations with gradient-free ensemble Kalman methods, Journal of Advances in Modeling Earth Systems, submitted.
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  • Bieli, M., Dunbar, O. R. A., deJong, Emily K., Jaruga, A., Schneider, T., Bischoff, T., 2022: An efficient Bayesian approach to learning droplet collision kernels: Proof of concept using “Cloudy”, a new n-moment bulk microphysics scheme, Journal of Advances in Modeling Earth Systems, submitted.
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  • Dunbar, O. R. A., Howland, M. F., Schneider, T., Stuart, A. M., 2022: Ensemble-based experimental design for targeted high-resolution simulations to inform climate models, Journal of Advances in Modeling Earth Systems, submitted.
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  • Stettz, S. G., Parazoo, N. C., Bloom, A. A., Blanken, P. D., Bowling, D. R., Burns, S. P., Bacour, C., Maignan, F., Raczka, B., Norton, A. J., Baker, I., Williams, M., Shi, M., Zhang, Y., Qiu, B., 2021: Resolving temperature limitation on spring productivity in an evergreen conifer forest using a model-data fusion framework, Biogeosciences, in review.
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  • Massoud, E. C., Bloom, A. A., Longo, M., Reager, J. T., Levine, P. A., Worden, J. R., 2021: Information content of soil hydrology in the Amazon as informed by GRACE, Hydrology and Earth System Sciences, in review.
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  • Stettz, S. G., Parazoo, N. C., Bloom, A. A., Blanken, P. D., Bowling, D. R., Burns, S. P., Bacour, C., Maignan, F., Raczka, B., Norton, A. J., Baker, I., Williams, M., Shi, M., Zhang, Y., Qiu, B., 2021: Resolving temperature limitation on spring productivity in an evergreen conifer forest using a model-data fusion framework, Biogeosciences, in review.
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  • Yang, Y., Bloom, A. A., Ma, S., Levine, P., Norton, A., Parazoo, N. C., Reager, J. T., Worden, J., Quetin, G. R., Smallman, T. L., Williams, M., Xu, L., Saatchi, S., 2021: CARDAMOM-FluxVal Version 1.0: a FLUXNET-based Validation System for CARDAMOM Carbon and Water Flux Estimates, Geoscientific Model Development, in review.
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  • Schneider, T., Dunbar, O. R. A., Wu, J., Böttcher, L., Burov, D., Garbuno-Iñigo, A., Wagner, G. L., Pei, S., Daraio, C., Ferrari, R., Shaman, J., 2021: Epidemic Management and Control Through Risk-Dependent Individual Contact Interventions, PLOS Computational Biology, in press.
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  • Sridhar, A., Tissaou, Y., Marras, S., Shen, Z., Kawczynski, C., Byrne, S., Pamnany, K., Waruszewski, M., Gibson, T. H., Kozdon, J. E., Churavy, V., Wilcox, L. C., Giraldo, F. X., Schneider, T., 2021: Large-eddy simulations with ClimateMachine v0.2.0: a new open-source code for atmospheric simulations on GPUs and CPUs, Geoscientific Model Development, submitted.
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  • Schneider, T., Stuart, A. M., Wu, J., 2021; Ensemble Kalman inversion for sparse learning of dynamical systems from time-averaged data, arXiv e-prints arXiv:2007.06175, submitted.
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  • Duncan, A. B., Stuart, A. M., Wolfram, M.-T., 2021; Ensemble inference methods for models with noisy and expensive likelihoods, arXiv e-prints arXiv:2104.03384, submitted.
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  • Carrillo, A., Hoffmann, F., Stuart, A. M., Vaes, U., 2021: Consensus based sampling, arXiv e-prints arXiv:2106.02519, submitted.
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  • Levine, M. E., Stuart, A. M., 2021: A framework for machine learning of model error in dynamical systems, arXiv e-prints arXiv:2107.06658, submitted.
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  • He, J., Cohen, Y., Lopez-Gomez, I., Jaruga A., Schneider, T., 2021: An improved perturbation pressure closure for eddy-diffusivity mass-flux schemes, Journal of Advances in Modeling Earth Systems, submitted.
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  • Huang, D. Z., Schneider, T., Stuart, A. M., 2021: Unscented Kalman inversion, arxiv e-prints arXiv:2102.01580, submitted.
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  • Ramadhan, A., Marshall, J. , Souza, A., Wagner, G.L., Ponnapati, M., Rackauckas, C., 2021: Capturing missing physics in climate model parameterizations using neural differential equations, arXiv e-prints arXiv:2010.12559, submitted.
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2022

  • Bartman, P., Bulenok, O., Górski, K., Jaruga, A., Łazarski, G., Olesik, M. A., Piasecki, B., Singer, C. E., Talar, A., Arabas, S., 2022: PySDM v1: particle-based cloud modeling package for warm-rain microphysics and aqueous chemistry. Journal of Open Source Software, 7(72), 3219.

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  • Zhang, X., Schneider, T., Shen, Z., Pressel, K. G., Eisenman, I., 2022: Seasonal cycle of idealized polar clouds: Large eddy simulations driven by a GCM, Journal of Advances in Modeling Earth Systems, 14, e2021MS002671.
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  • Howland, M. F., Dunbar, O. R. A., Schneider, T., 2022: Parameter uncertainty quantification in an idealized GCM with a seasonal cycle, Journal of Advances in Modeling Earth Systems, 14, e2021MS002735.
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  • Wang, Y., Frankenberg, C., 2022: On the impact of canopy model complexity on simulated carbon, water, and solar-induced chlorophyll fluorescence fluxes, Biogeosciences, 19, 29-45.
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  • Shen Z., Sridhar, A., Tan, Z., Jaruga A., Schneider, T., 2022: A library of large-eddy simulations forced by global climate models, Journal of Advances in Modeling Earth Systems,
    14, e2021MS002631.
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2021

  • Gallet, B., Ferrari, R., 2021: A quantitative scaling theory for meridional heat transport in planetary atmospheres and oceans. AGU Advances, 2(3), e2020AV000362.

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  • Famiglietti, C. A., Smallman, T. L., Levine, P. A., Flack-Prain, S., Quetin, G. R., Meyer, V., Parazoo, N. C., Stettz, S. G., Yang, Y., Bonal, D., Bloom, A. A., Williams, M., Konings, A. G., 2021: Optimal model complexity for terrestrial carbon cycle prediction, Biogeosciences, 18, 2727–2754.
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  • Bonan, D. B., Schneider, T., Eisenman, I., Wills, R. C. J., 2021: Constraining the date of a seasonally ice-free Arctic using a simple model, Geophysical Research Letters, 48, e2021GL094309.
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  • Yuval, J., O’Gorman, P. A., Hill, C. N., 2021: Use of neural networks for stable, accurate and physically consistent parameterization of subgrid atmospheric processes with good performance at reduced precision, Geophysical Research Letters, 48, e2020GL091363.
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  • Wang, Y., Köhler, P., He, L., Doughty, R., Braghiere, R., Wood, J. D., Frankenberg, C., 2021: Testing stomatal models at stand level in deciduous angiosperm and evergreen gymnosperm forests using CliMA Land (v0.1), Geoscientific Model Development, 14, 6741-6763.
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  • Nelsen, N. H., Stuart, A. M., 2021: The random feature model for input-output maps between Banach spaces, SIAM Journal on Scientific Computing, 43(5), A3212–A3243.
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  • Dunbar, O. R. A., Dunlop, M. M., Elliott, C. M., Hoang, V. H., Stuart, A. M., 2021: Reconciling Bayesian and perimeter regularization for binary inversion, SIAM Journal on Scientific Computing, 42, A1984−A2013.
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  • Byrne, S., Wilcox, L. C., Churavy, V, 2021: MPI.jl: Julia bindings for the Message Passing Interface, JuliaCon Proceedings, 1, 68.
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  • Schneider, T., Jeevanjee, N., Socolow, R., 2021: Accelerating progress in climate science, Physics Today, 74, 44-51.
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  • Christopoulos, C., Schneider, T., 2021: Assessing biases and climate implications of the diurnal precipitation cycle in climate models, Geophysical Research Letters, 48, e2021GL093017.
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  • Ming, Y., Loeb, N. G., Lin, P., Shen, Z.,  Naik, V., Singer, C. E., et al., 2021:. Assessing the influence of COVID-19 on the shortwave radiative fluxes  over the East Asian marginal seas. Geophysical Research Letters, 48, e2020GL091699.
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  • Arnscheidt, C. W., Marshall, J., Dutrieux, P., Rye, C. D., Ramadhan, A., 2021: On the settling depth of meltwater escaping from beneath Antarctic ice shelves, Journal of Physical Oceanography, 51, 2257–2270.
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  • Wagner, G. L., Chini, G. P., Ramadhan, A., Gallet, B., Ferrari, R., 2021: Near-inertial waves and turbulence driven by the growth of swell, Journal of Physical Oceanography, 51, 1337-1351.
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  • Braghiere, R. K., Wang, Y., Doughty, R., Sousa, D., Magney, T., Widlowski, J., et al., 2021: Accounting for canopy structure improves hyperspectral radiative transfer and sun-induced chlorophyll fluorescence representations in a new generation Earth System model. Remote Sensing of Environment, 261, 112497, doi:10.1016/j.rse.2021.112497
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  • Cheng, R., Novak, L., Schneider, T., 2021: Predicting the interannual variability of California’s total annual precipitation. Geophysical Research Letters, 48, e2020GL091465.
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  • Wang, Y., Anderegg, W. R. L., Venturas, M. D., Trugman, A. T., Yu, K., Frankenberg, C., 2021: Optimization theory explains nighttime stomatal responses, New Phytologist, 230, 1550-1561, doi:10.1111/nph.17267
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  • Dunbar, O. R. A., Garbuno-Inigo, A., Schneider, T., Stuart, A. M., 2021: Calibration and uncertainty quantification of convective parameters in an idealized GCM, Journal of Advances in Modeling Earth Systems, 13, e2020MS002454.
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  • Singer, C.E., Lopez-Gomez, I., Zhang, X., Schneider, T., 2021: Top-of-atmosphere albedo bias from neglecting three-dimensional radiative transfer through clouds, Journal of Atmospheric Sciences, 78, 12, 4052-4069.
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  • Burov, D., Giannakis, D., Manohar, K., Stuart, A.M., 2021: Kernel analog forecasting: multiscale test problems, SIAM Journal on Multiscale Modeling and Simulation, 19, 1011–1040.
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  • Schneider, T., Stuart, A.M., Wu, J., 2021: Learning stochastic closures using ensemble Kalman inversion, Transactions of Mathematics and its Applications, 5(1), 1-31.
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  • Cleary, E., Garbuno-Inigo, A., Lan, S., Schneider, T., Stuart, A.M., 2021: Calibrate, emulate, sample, Journal of Computational Physics, 424, 109716.
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2020

  • Bloom, A. A., Bowman, K. W., Liu, J., Konings, A. G., Worden, J. R., Parazoo, N. C., Meyer, V., Reager, J. T., Worden, H. M., Jiang, Z., Quetin, G. R., Smallman, T. L., Exbrayat, J.-F., Yin, Y., Saatchi, S. S., Williams, M., Schimel, D. S., 2020: Lagged effects regulate the inter-annual variability of the tropical carbon balance, Biogeosciences, 17, 6393–6422.
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  • Bhamidipati, N., Souza, A. N., Flierl, G. R., 2020: Turbulent mixing of a passive scalar in the ocean mixed layer, Ocean Modelling, 149, 101615.
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  • Schneider, T., Kaul, C. M., Pressel, K. G., 2020: Solar geoengineering may not prevent strong warming from direct effects of CO2 on stratocumulus cloud cover, Proceedings of the National Academy of Sciences, 117, 30,179-30,185.
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  • Lopez-Gomez, I., Cohen, Y., He, J., Jaruga, A., Schneider, T., 2020: A generalized mixing length closure for eddy-diffusivity mass-flux schemes of turbulence and convection. Journal of Advances in Modeling Earth Systems, 12, e2020MS002161.
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  • Souza, A. N., Wagner, G. L., Ramadhan, A., Allen, B., Churavy, V., Schloss, J., Campin, J., Hill, C., Edelman, A., Marshall, J., Flierl G., Ferrari, R., Uncertainty quantification of ocean parameterizations: application to the K-Profile-Parameterization for penetrative convection, Journal of Advances in Modeling Earth Systems, 12, e2020MS002108.
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  • Gallet, B., Ferrari, R., 2020: The vortex gas scaling regime of baroclinic turbulence. Proceedings of the National Academy of Sciences, 117, 4491-4497.
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  • Cohen, Y., Lopez-Gomez, I., Jaruga A., He, J., Kaul, C. M., Schneider, T., 2020: Unified entrainment and detrainment closures for extended eddy-diffusivity mass-flux schemes. Journal of Advances in Modeling Earth Systems, 12, e2020MS002162.
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  • Shen, Z., Pressel, K. G., Tan, Z., Schneider, T., 2020: Statistically steady state large-eddy simulations forced by an idealized GCM: 1. Forcing framework and simulation characteristics. Journal of Advances in Modeling Earth Systems, 12, e2019MS001814.
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  • Ramadhan, A., Wagner, G., Hill, C., Campin, J.M., Churavy, V., Besard, T., et al., 2020: Oceananigans.jl: Fast and friendly geophysical fluid dynamics on GPUs. Journal of Open Source Software, 5, doi 10.21105/joss.02018.
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  • Garbuno-Inigo, A., Hoffmann, F. Li, W., Stuart, A.M., 2020: Interacting Langevin diffusions:
    gradient structure and ensemble Kalman sampler, SIAM Journal on Applied Dynamical Systems, 19, 412-441.
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  • Novak, L., Schneider, T., Ait-Chaalal, F., 2020: Midwinter suppression of storm tracks in an idealized zonally symmetric setting, Journal of the Atmospheric Sciences, 77, 297-313.
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2019

2018

  • Callies, J., Ferrari, R., 2018: Baroclinic instability in the presence of convection. Journal of Physical Oceanography, 48, 1543–1553.
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  • Stuart, A. M., Teckentrup, A. L., 2018: Posterior consistency for Gaussian process approximations of Bayesian posterior distributions. Mathematics of Computation, 87, 721-753.
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  • Tan, Z., Kaul, C. M., Pressel, K. G., Cohen, Y., Schneider, T., Teixeira, J., 2018: An extended eddy-diffusivity mass-flux scheme for unified representation of subgrid-scale turbulence and convection. Journal of Advances in Modeling Earth Systems, 10, 770-800.
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  • Callies, J., Ferrari, R., 2018: Note on the rate of restratification in the baroclinic spindown of fronts. Journal of Physical Oceanography, 48, 45–60.
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2017

  • Schneider, T., Lan, S., Stuart, A. M., Teixeira, J., 2017: Earth system modeling 2.0: A blueprint for models that learn from observations and targeted high-resolution simulations. Geophysical Research Letters, 44, 12,396–12,417.
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  • Schillings, C., Stuart, A. M., 2017: Analysis of the ensemble Kalman filter for inverse problems. SIAM Journal on Numerical Analysis, 55, 1264-1290.
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  • Iglesias, M. A., Lin, K., Lu, S., Stuart, A. M., 2017: Filter based methods for statistical linear inverse problems. Communications in Math. Sciences, 15, 1867-1896.
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  • Schneider, T., Teixeira, J., Bretherton, C. S., Brient, F., Pressel, K. G., Schär, C., Siebesma, A. P., 2017: Climate goals and computing the future of clouds. Nature Climate Change, 7, 3-5.
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